Clone the repository from github together with Jellyfish submodule (
git clone --recursive firstname.lastname@example.org:macieksk/seed-kraken.git cd seed-kraken
The branch with the latest version is
Build seed-Kraken and install it into a directory in your
$PATH, for example
This step requires C++11 enabled GCC with support for
auto, so GCC >4.4 is required.
cd Jellyfish/build/ autoreconf -i ../ ../configure make -j 4
Now, link the seed-modified
jellyfish binary to a directory in in your
Watch out, as this may conflict with another version of Jellyfish you have already installed.
cd bin ln -s "$(realpath jellyfish)" ~/bin/
Note: this a modified version of Jellyfish v1.11_seedmod made to work with spaced seeds.
jellyfish from within its scripts.
Make sure that the correct version of jellyfish is in your path:
$ jellyfish --version jellyfish 1.1.11_seedmod
Optionally you can setup
PATH every time before running seed-Kraken: